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 New in v11 

tree_subset command

Extract a subset of a binary tree defined by a subset of labels in the tree. The output tree is the binary tree for those labels according to the branching order of the input tree.

Output is written to a tree in tabbed text format (tabbedout option) and/or Newick format (newickout option).


usearch -tree_subset big.tree -labels labels.txt -newickout subset.tree