The value of orfstyle is an integer obtained by adding the numbers from the table below. The default value of orfstyle is 5.
|1||Allow an ORF to start at the beginning of the nucleotide sequence (otherwise, must begin with a START codon).|
|2||Allow an ORF to start immediately following a STOP codon (otherwise, must begin with a START codon). This compensates for read errors that might corrupt a START codon sequence, and allows non-standard START codons.|
|4||Allow an ORF to end at the end of the nucleotide sequence (otherwise, must be terminated by a STOP codon).|
|8||Include the STOP codon, if any, in the translated sequence. This is useful in the findorfs command to distinguish ORFs that contain a STOP from those that are terminated by the end of the nucleotide sequence. The STOP codon is represented by an asterisk (*). Do not use for translated searches.|